JOSHUA A. THIA
  • Home
  • Research
  • Opportunities
  • Teaching
  • Contact
  • Code

Code

I taught myself to code during my PhD: I feel most at home in R but also speak python and Unix.

My love for coding has lead me to pursue extracurricular pedagogical activities in computer programming and I am a certified Software Carpentry instructor.

Below you can find descriptions of my major coding projects.

Picture
genomalicious
A smorgasbord of R functions for population genomic analyses.

Source code available on my GitHub.

This R package was birthed from my personal need to create simple, basic tools for importing, manipulating, and reformatting population genomic data in R.


This package is a continually evolving community of programmes, but my primary ethos for its functionality are to provide:
​
  1. Easy import of VCF files into R as (long) data tables, which forms the main data object for many other functions.

  2. Easy-to-use functions for converting VCF-derived SNP data into formats commonly used population genetics/genomics programmes (inside and outside R).

  3. Easy-to-use functions for importing outputs from common population genetic/genomics programmes that operate outside R.

  4. Tools for attractive, aesthetically pleasing figures for data exploration and results presentation.
    ​
  5. Tools for analysing pooled and individually sequenced RAD-seq data.

CITE:
Thia JA, Riginos C (2019) genomalicious: serving up a smorgasbord of R functions for population genomic analyses. bioRxiv. doi.org/10.1101/667337.

Links to other profiles

Picture
Picture
Picture
Picture
Picture
Picture
Picture
Powered by Create your own unique website with customizable templates.
  • Home
  • Research
  • Opportunities
  • Teaching
  • Contact
  • Code